Reply To: How to reconstruct full atom structure from silent file

[Sally Ride]

Well, yes I could but extract.pl returns only backbone. I think rosetta -extract only reformats torsion angles to Cartesian.

What I am looking for is a crude reconstruction of side chains using rosetta and starting with backbone only structures in silent format.

> You can use the extract.pl scripts in rosetta_scripts package to extract PDB from a silent mode file.