Reply To: about SASA interpretation

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June 26, 2008 at 3:10 am #3984
bpierce
Participant

    Hi Tarajano,

    SASA stands forSolvent Accessible Surface Area. POL means polar, and APOL is apolar, so the sum of the polar and apolar solvent accessible areas will be the total SASA. The D stands for delta, so when you are using ddg_bind_only, you can calculate the change in SASA upon binding, ie the size of the interface in square Angstroms.

    best,

    Vanita.