Reply To: about SASA interpretation

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June 26, 2008 at 2:38 pm #3985
bjornwallner
Participant

    thanks a lot for your very clear reply.
    best,
    tarajano

    > Hi Tarajano,
    >
    > SASA stands forSolvent Accessible Surface Area. POL means polar, and APOL is apolar, so the sum of the polar and apolar solvent accessible areas will be the total SASA. The D stands for delta, so when you are using ddg_bind_only, you can calculate the change in SASA upon binding, ie the size of the interface in square Angstroms.
    >
    > best,
    >
    > Vanita.