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#3986
Sally Ride
Participant

    I guess you meant -fa_output.

    I tried this and it does not work with -extract but it does work with the -refold -score which extract.pl uses. So the final rosetta command which works looks like that:

    rosetta.gcc -refold -score -fa_output -scorefile test -silent_input -nstruct 1 -s test.out -l tagfile

    Thanks a lot for a hint!

    > I believe that if you use the command-line flag -fa_input flag, rosetta++ will extract
    > full-atom coordinates. If that doesn’t work, please let me know
    >