Reply To: How to reconstruct full atom structure from silent file

[Sally Ride]

I guess you meant -fa_output.

I tried this and it does not work with -extract but it does work with the -refold -score which extract.pl uses. So the final rosetta command which works looks like that:

rosetta.gcc -refold -score -fa_output -scorefile test -silent_input -nstruct 1 -s test.out -l tagfile

Thanks a lot for a hint!

> I believe that if you use the command-line flag -fa_input flag, rosetta++ will extract
> full-atom coordinates. If that doesn’t work, please let me know
>