Reply To: Rosetta doesn’t read the starting structure – solved

[Anonymous]

1. I removed the extension but it didn’t make any difference.

2.I’m pretty much sure that the path.txt file is well specified. I tried to use as a starting structure a file that didn’t exist. Rosetta behaved properly and it output the error that there is no such file.

The error lines that I get are:

__reading starting structure: /home/Bob/Rosetta/Protein_pred/1py6/1py6_start/./1py6_start_0001.pdb__

__can’t find starting residue in pdb file__

__ERROR:: Unable to determine sequence length from pdb file__

and later on

__STOP: You need to fill the fold_tree before calling Pose::set_coords__

__ERROR:: Exit from: pose.cc line: 2013__

So Rosetta sees the file but treats it like a wrong format, but I’m 100% sure that the format is fine.