Reply To: Rosetta doesn’t read the starting structure – solved

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February 14, 2009 at 11:03 pm #4044
Anonymous

    Thanks to the support-team the problem was solved.

    Well, the thing is that all the input files used for generating the models in the first run (fasta, psipred, fragment…) where named: 1py6a.* or in a similar way. After extraction of decoys from the silent file there was no information regarding the chains in the resulting pdbs. So when I tried to relax such structures, Rosetta, despite having read the input files, was unable to process the starting structures (correct me if I’m wrong).

    I changed names of the input files to 1py6_.* and used the following command line

    ROSETTA ac 1py6 _ -relax -nstruct 1 -s 1py6_start -paths path.txt

    Thanks again Yiliu (:biggrin:)

    Best Regards
    Bob3k