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    Make sure you increase max_loops_depth to be equal or greater than the number of loops in your loop library. For example, if your input loop library has 500 loops, you must have:
    int const max_loop_depth = { 500 };
    in and then recompile.
    You can set it to a large number if you regularly use large loop libraries (like with the peptide extension protocol) but don’t set it larger than 20 000 (better to keep it to about 2000 and use more, smaller loop libraries).