Reply To: how to keep native structure when do loop modeling

[Anonymous]

After I further checked out. I still saw slight movement of sidechains of many residues. the positions of alpha C are same. what is the reason. thanks

args are
-database /usr/local/rosetta3/rosetta3_database/
-in:file:fullatom
-in:ignore_unrecognized_res
-loops:fix_natsc true
-loops::input_pdb template.pdb
-loops:loop_file template.pose_loops
-loops::frag_sizes 9 3
-loops::frag_files fragment9 fragment3
-loops::remodel quick_ccd
-loops::refine refine_ccd
-packing:pack_missing_sidechains false
-packing:resfile
-nstruct 1

Resfile
NATRO
start