Member Site › Forums › Rosetta 3 › Rosetta 3 – General › PDB HETATM › Reply To: PDB HETATM
August 6, 2009 at 8:00 pm
#4130
Anonymous
I found a related post in the rosetta++ forum that appears I need to pull the ligand out of the PDB file as if I was doing a Protein-ligand docking. The ligand in my particular example is required for the protein to dock with a different protein which also requires a different ligand.
If I have two PDB files that I want to do Protein-Protein docking where each has a ligand what steps do I need to go through to make sure the ligands are considered in the overall best docking model for the lowest score.