Member Site Forums Rosetta 3 Rosetta 3 – General Protein-Protein Docking Reply To: Protein-Protein Docking


    None of the currently released executables will do flexible-loop docking, so far as I know. There is a set of flags that will do this in rosetta++; I do not know what they are.

    You may have some luck with the DockDesignParser. If (this is a big if) it allows loop modeling, you can tell it to cycle between docking and loop modeling. I’m not sure if it does or not.