Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Ab initio/relax flag file setup › Reply To: Ab initio/relax flag file setup
August 31, 2009 at 2:17 pm
#4164
Anonymous
I can’t say for sure but I think you should be safe. The fragment libraries are created from secondary structure prediction, and so the fragments themselves encode the local secondary structure preferences. I don’t see an obvious option for including your own ss file either (except for defining where the loops are yourself).