Member Site Forums Rosetta 3 Rosetta 3 – General Ab initio/relax flag file setup Reply To: Ab initio/relax flag file setup


    I can’t say for sure but I think you should be safe. The fragment libraries are created from secondary structure prediction, and so the fragments themselves encode the local secondary structure preferences. I don’t see an obvious option for including your own ss file either (except for defining where the loops are yourself).