Reply To: Make_fragments.pl database

[Anonymous]

> Anyone knows the right database to download from the ncbi site?
> The link in the rosetta tutorial is broken. I know that’s the nr one, but fasta formated or env.nr..
> any input on this?
>
> thank you
>
> tiago

You can use UniRef90 from http://www.uniprot.org/. Fasta formated and you a have to run formatdb for setting up the psiblast database files. Just rename the UniRef90 fasta to nr and run

‘/my/blast/installation/formatdb -o T -i nr’

David K