Member Site Forums Rosetta 3 Rosetta 3 – General Loop modeling FLAGS Reply To: Loop modeling FLAGS


    Here’s an example of a script to run through 56 directories and get the job started with a new jran each time. The formatting may be destroyed by the forum software but you’ll get the idea.


    set dir = 1

    set mpth = ‘/netscr/smlewis/1F11_cutpoint_search_-2-‘

    while ($dir lessthan= 56)

    @ rnum = ($dir + 84231000)

    chdir $mpth/$dir

    echo directory $dir rnum $rnum

    bsub -q week -o log -R “blade15 || blade16” AnchoredDesign.linuxgccrelease @options -jran $rnum

    @ dir = $dir + 1