Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Loop modeling FLAGS › Reply To: Loop modeling FLAGS
December 4, 2009 at 3:11 pm
#4268
Anonymous
Here’s an example of a script to run through 56 directories and get the job started with a new jran each time. The formatting may be destroyed by the forum software but you’ll get the idea.
#!/bin/tcsh
set dir = 1
set mpth = ‘/netscr/smlewis/1F11_cutpoint_search_-2-‘
while ($dir lessthan= 56)
@ rnum = ($dir + 84231000)
chdir $mpth/$dir
echo directory $dir rnum $rnum
bsub -q week -o log -R “blade15 || blade16” AnchoredDesign.linuxgccrelease @options -jran $rnum
@ dir = $dir + 1
end