Reply To: ClusterApp hogs way too much memory…

[Anonymous]

> Hi, all.
>
> I’m trying to cluster some 50,000 de novo decoys, the initial sequence was about 60 aa long. But my lab’s cluster’s queueing app kills the job, and when I run it without the queuing app, it hogs the memory perceptibly.
>
> Some facts:
> (1) This happens when clustering both silent and pdb files.
>
> (2) Apparently, Rosetta 2.3. clustering worked fine on the cluster… but, according to a co-worker, I can’t cluster Rosetta 3.0 decoys with the Rosetta 2.3. application. (I am new to both, so I decided to learn 3.0 first.)
>
> (3) The IT admin gave me this info on the cluster:
> kernel: 2.6.16.28 SMP, i686, 32bit
> gcc-4.1
>
> Is this a bug, or a behaviour to be expected?