I’d guess not, if it’s giving you trouble. I haven’t used it. Are there other scripts in that folder to try? (I don’t have a copy of the user release handy.)
I assume you’re trying to extract silent files to PDB; is this using the extract_pdbs executeable? You may be able to modify it or its options? Also, what type of silent file are you outputting from docking? You may have better luck with a binary silent file than whatever the default is (they store more information).