I switched from rosetta2.3 to rosetta3.1 recently. I found that rosetta3.1 could run faster than rosetta2.3 on the same job using one node. Maybe that is the improved part. But I used to do perturbative docking and ensemble docking, could i do the same kind of thing in rosetta3.1? I could see that some of the flags are gone.
In rosetta2.3, I used to do prepacking before docking. Could I do the same kind of thing in rosetta3.1?
Anyone knows my answer? please share them with me. Thanks a lot.
> I found that the 3.1 version is more difficult to use the older one 2.3. Especially, the parallel doesn’t work.
> Isn’t the newer version poorer than the previous release? How do the authors think about it? I never see any other kinds of newer suites like this case.