Reply To: PyRosetta AbInitio Folding protocol

[Anonymous]

I use extended conformation to avoid any bias. Of cause 5000 may be not enough, but this is certainly not the main fault — the classic “AbinitioRelax” program from Rosetta 3.1 package uses only 1000 decoys in my case, and results are apparently better.
So it seems that the protocol listed above is for some reason not efficient, do you have any clues?