Member Site Forums Rosetta 3 Rosetta 3 – General “CEN” atom in the pdb file Reply To: “CEN” atom in the pdb file


    my command is :
    AbinitioRelax.linuxgccrelease -in::file::fasta seqt_.fasta -in:file:frag3 aase
    qt_03_05.200_v1_3 -in:file:frag9 aaseqt_09_05.200_v1_3 -out:pdb -run:constant_se
    ed -run:jran $seed -database /ifs/ibfs3/data/ikosztin/NIH-protfold/rosetta3.1/ro
    setta_database -out:file:fullatom -out:nstruct 400 > out

    I included the fullatom flag (-out:file:fullatom). Why do I still get that kind of pdbs ( with CEN) ? Thank you very much!