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    But how to use domain insertion mode to do loop modeling? In my situation I got 96 residues in the loop without structure. Also I checked the options for loopmodeling, which also include abinitio: inside. I tried to model this long loop and actually I got several structures and I think this can be compared with experimental data.

    But I still do not know whether it make sense or not to use loopmodeling do model this long long loop. Thanks for any comments and suggestions.