Reply To: Abinitio Structure Prediction – Sanity Test

[Anonymous]

> A) Poke around in the integration tests for abinitio/abrelax. They use 1l2y.pdb,…

Excellent. Thanks! That’s a big help for me.

> I’m pretty sure that line is supposed to read 4.4.1 (and 4.4.1 only). Where did you see that so I can try to fix it?

The version of Rosetta that I have came packaged up in “rosetta3.1_Bundles.tgz”:

||$ tar tzf rosetta3.1_Bundles.tgz
rosetta3.1_database.tgz
rosetta3.1_demos.tgz
rosetta3.1_fragments.tgz
rosetta3.1_source.tgz
BioTools-3.1.tgz
rosetta3.1_user_guide.tgz
README.platforms
README.version
release.note||

And the file “README.platforms” contains the following excerpt:

||- Linux 2.6.27-9-generic #1 SMP x86_64 GNU/Linux
Scons script: v0.98.5.r3057
gcc (GCC) 4.1.1, gcc (GCC) 4.2.4, gcc (GCC) 4.3.2
Note: GCC with Ubuntu 4.3.2-1ubuntu12 and any version after it does not work||

> C) I don’t know much about it, but there is a membrane_abinitio you may want to consider.

I’ll definitely have to give that a try.

Thanks for all your help on this.

Westley