Member Site Forums Rosetta 3 Rosetta 3 – General Snugdock and antibody modelling Reply To: Snugdock and antibody modelling


    I don’t believe the antibody stuff was released in 3.1. I think you need to use 2.3 (which passes everything through the monolithic rosetta.gcc). There is antibody stuff within 3.1 down in the libraries, but the executeable wasn’t released.

    I’m assuming you’re using *nix; the easiest way to sort your results is…sort.

    sort -n -k2 score.fasc

    will sort based on the second column (which is usually total_score); you can also sort on RMSD. There may be scripts available for making score versus RMSD plots; there’s also a pymol plotter (src/rdwizard/rmsd_score_pymol_plotter) which creates RMSD/score plots in pymol where you can click on a point and it loads that structure.