Member Site Forums Rosetta 3 Rosetta 3 – General Loop extensions at the end of chains Reply To: Loop extensions at the end of chains


    After some digging into the code I realized there was a function being called that was specific to the authors original project. It was looking for specific residues in the example pdb file. When these were removed it failed. When that function was commented out and recompiled the rest of the program ran fine and produces floopy tails of any lengtth.


    > I am trying to model the ends of a protein structure that extend beyond what I have in the PDB file. I tried using the FloppyTails protocol but that seemed to only work for really long tails (> 30aa) and gave me a segmentation fault when I tried to make them shorter (3-10 aa). Does anyone know of a way to use the loop prediction or modify the floopy tails protocol to get this to work?
    > thanks
    > James