Reply To: Problem creating pNNMAKE.gnu

[Anonymous]

I have the same problem,too.
I want to build my own fragments with different size,not only 3 aa or 9 aa,So the Robetta sever cann’t help,Could any one sovle the problem,please?
3Q!
jianhong zhou
China pharmeceutical University

> Hi,
>
> I have installed ROSETTA3.1 on a AMD 64bit machine. However I am not able to “make” pNNMAKE.gnu which is required by make_fragments.pl program. I am getting when I type “make” in the rosetta_fragments/nnmake directory:
>

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> [anirbang@biogene nnmake]$ make
>

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> SYSTEM SETUP [make.system]
> COMPILER=gnu @ biogene.npsf.cdac.ernet.in
> F77=g77
> FFLAGS=-finline-functions -funroll-loops -W -ffixed-line-length-132 -Wimplicit -O -ffast-math -malign-double
> FOPTIMFLAGS=-O -ffast-math -malign-double
> FDEBUGFLAGS=-g -Wall -Wimplicit -Wsurprising -Wformat -W
> FPROFILEFLAGS=-pg
> LINKFLAGS=
>

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> g77 -finline-functions -funroll-loops -W -ffixed-line-length-132 -Wimplicit -O -ffast-math -malign-double -c -o .gnu.make_ss_nn.o make_ss_nn.f
> make_ss_nn.f:0: error: -malign-double makes no sense in the 64bit mode
> make: *** [.gnu.make_ss_nn.o] Error 1
>

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>
> Please suggest a solution.
>
>
> Regards,
>
>
>
> —
> Anirban Ghosh
> Grade Based Engineer
> Bioinformatics Team
> Scientific & Engineering Computing Group
> Centre for Development of Advanced Computing
> Pune, India