Reply To: Problem creating pNNMAKE.gnu

[Anonymous]

hah,I have solved the problem.
open the make.system file at the nnmake dir,
delete the L67 like this: $FOPTIMFLAGS=-o -ffast-match -malign-double ,just add # at the front.
[HengZheng@localhost nnmake]$ $make
the compileing is ok!!
then type ./pNNMAKE.gnu at the terminal;
1./
2./
3./
4/net/shared/nnmake_database/
5./
6./
7./
8./
9./
10./
11./
12./
13/scratch/shared/nnmake_database/
14./
15./
16./
17./
NNMAKE requires three arguments
prefix code (char*2),
pdb name in lowercase (char*4)
chain name (char*1, ‘_’ for none)
e.g. ‘pNNMAKE ta 1ubq _ ‘

4 arguments required for forcing barcodes:
pNNMAKE code pdbname chain -barcode_file file
OR tries pdbnamechain.bar

4 arguments required for making loop libraries:
pNNMAKE code pdbname chain zone_file
OR
pNNMAKE code pdbname chain -zonelist filename

NOTE: zone files should be base name for zones,
template pdb, template ssa, and loop files