Reply To: Does Rosetta have homology modeling protocol?

[Anonymous]

Having never done this, (and having had no luck so far in getting the necessary documentation), I’m just guessing.

You should be able to get a new structure from an old structure by changing the sequence to match (with fixbb, for example) and running the relax protocol. Threading gaps/insertions into the loops can be done with looprelax instead. I’m sure there are faster ways to do this but I don’t know what they are.