Member Site Forums Rosetta 3 Rosetta 3 – General high resolution protein docking doesn’t work Reply To: high resolution protein docking doesn’t work


    Thank you very much for your so kind reply. I do use the command ” mpirun -np 6 docking_protocol.linuxgccrelease @flags2 > docking2.log&” for this job so that it would be finished much faster. Could you please give me some advices how to enable the option “specify named output directories”? I would be very appreciated for your kind helps.

    Here is my output section in flags2:

    -nstruct 10
    # this should be set to a large number for effective sampling
    # reduces copious output, without overdoing as with -mute all
    -o dock_output2
    # scorefile will be named (or .fasc for fullatom)