Member Site › Forums › Rosetta 3 › Rosetta 3 – General › cluster error › Reply To: cluster error
December 20, 2010 at 5:03 pm
#4772
Anonymous
The problem with your PDB file is that all your occupancies are zero (columns 54-59). Change column 56 to be 1 instead of 0 (so the occupancies are all 1.00 instead of 0.00) and it will work fine. Rosetta silently ignores zero-occupancy atoms; for these PDBs it silently ignores the entire PDB and crashes down the line.
I believe the flag “-trust_missing_coords” will have the same effect if you don’t want to use a script to fix all your PDB files.