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I solved the problem by setting the path to the bin directory .. but I want know one thing that If I want to use a fragment library of 10 residues or above how can I create it also … is it possible to use 10 fragment library to model the loop as I was reading the following paper – .
Hu X, Wang H, Ke H, Kuhlman B.
Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
Abstract
In this paper they have used a library of fragments of size 10 and designed the loop using rosetta only.. if anybody can shed some light on this topic it will be of great help