Reply To: I’m a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)

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February 4, 2011 at 3:16 pm #4950
Anonymous

    “## Where to write the silent.out file. Specified in my Condor script.
    #-pdb work/jnk_pp_1_001/3″

    Um…that looks like it’s putting out PDBs already. Are you sure they’re silent files? Post one as an attachment.

    “Also, I encountered a ‘unrecognized aa 100’ error when using ligand_rpkmin.linuxgccrelease, what does it mean?”
    You have an input, probably a PDB, misformatted such that it has a residue named 100 (instead of numbered 100). The PDB file format is column-based, so which column the characters appear in determines how they’re interpreted. The PDB website has the official specifications someplace.