Reply To: mpi / jd2 with AbinitioRelax and relax (3.2)

[Anonymous]

Regarding minirosetta…

1. I had never really looked into it. Just read quickly about it… so it is an all-in-one app. Somewhere I read it is the “developper” version of the protocols, whereas the individual apps are the “release” version… is that true?

2. I tried minirosetta, but right now it does not look like it is using jd2 for abinitio (see below).

3. I looked into the output logs of AbinitioRelax, relax and minirosetta for JobDistributor statements.

AbinitioRelax has only the following statement:
protocols.jobdist.JobDistributors:

relax has the following statements :
protocols.jd2.JobDistributor:
protocols.jd2.MPIWorkPoolJobDistributor:
protocols.jd2.PDBJobInputter:

minirosetta has only the following statement (ran with the same flags as I used for AbinitioRelax, see attachment):
protocols.jobdist.JobDistributors:

So, unless I am doing something wrong, minirosetta -abinitio DOES NOT use jd2 (i.e. to me, it looks like “AbinitioRelax -abinitio” or “minirosetta -abinitio” are using the same code…)

Cheers,

Stéphane