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February 26, 2011 at 8:17 pm
#5086
Anonymous
As you suggested, Rosetta isn’t quite happy with the way you’ve formatted the RNA PDB.
For some reason, RNA appears to not be in 3.2, but it was in 3.1 (and I guess 3.0).
Do you have an rna integration test in the folder rosetta_source/test/integration/tests/(rna something?) You can compare that RNA PDB to your own RNA pdb to see what format Rosetta expects. You can also examine the RNA residue types; I don’t know where they are in your copy of the database but it will be something like rosetta_database/chemical/residue_type_sets/(rna?)/types/*.params.