Reply To: ERROR READING PDB FILE

[Anonymous]

Thanks for the input, but i have checked these *.params file mentioned above. And as far as PDBs go then i am providing a sample of both PDBs in-built(rosetta3.0) and my modified: –

In-built PDBs(in rosetta_source)
ATOM 374 C5 rG A 12 -15.576 14.697 9.442 1.00 0.00
ATOM 375 C6 rG A 12 -15.232 15.983 9.940 1.00 0.00
ATOM 376 O6 rG A 12 -14.494 16.852 9.424 1.00 0.00
ATOM 377 N7 rG A 12 -15.194 14.038 8.278 1.00 0.00
ATOM 378 C8 rG A 12 -15.796 12.884 8.340 1.00 0.00
ATOM 379 N9 rG A 12 -16.560 12.732 9.493 1.00 0.00
ATOM 380 1H5* rG A 12 -17.361 8.686 7.054 1.00 0.00
ATOM 381 2H5* rG A 12 -18.945 9.217 6.477 1.00 0.00
ATOM 382 H4* rG A 12 -18.863 9.316 8.825 1.00 0.00
ATOM 383 H3* rG A 12 -19.038 12.072 7.562 1.00 0.00
ATOM 384 1H2* rG A 12 -19.157 12.908 10.021 1.00 0.00
ATOM 385 2HO* rG A 12 -19.211 11.371 11.694 1.00 0.00
ATOM 386 H1* rG A 12 -17.132 11.318 10.908 1.00 0.00
ATOM 387 H1 rG A 12 -15.631 17.118 11.597 1.00 0.00
ATOM 388 1H2 rG A 12 -17.864 15.276 13.509 1.00 0.00
ATOM 389 2H2 rG A 12 -16.992 16.762 13.339 1.00 0.00
ATOM 390 H8 rG A 12 -15.705 12.110 7.562 1.00 0.00
TER

1RNK.pdb(modified):
ATOM 1082 O2 rU A 34 -25.519 -3.185 11.349 1.00 0.00 O
ATOM 1083 N3 rU A 34 -26.656 -5.031 12.022 1.00 0.00 N
ATOM 1084 C4 rU A 34 -27.107 -5.927 12.966 1.00 0.00 C
ATOM 1085 O4 rU A 34 -27.806 -6.874 12.623 1.00 0.00 O
ATOM 1086 C5 rU A 34 -26.688 -5.642 14.319 1.00 0.00 C
ATOM 1087 C6 rU A 34 -25.911 -4.561 14.575 1.00 0.00 C
ATOM 1088 H5′ rU A 34 -24.511 -1.035 17.805 1.00 0.00 H
ATOM 1089 H5” rU A 34 -25.539 -2.234 16.991 1.00 0.00 H
ATOM 1090 H4′ rU A 34 -22.762 -1.409 16.072 1.00 0.00 H
ATOM 1091 H3′ rU A 34 -24.945 0.209 15.679 1.00 0.00 H
ATOM 1092 HO3′ rU A 34 -23.937 0.448 13.434 1.00 0.00 H
ATOM 1093 H2′ rU A 34 -26.340 -1.551 14.787 1.00 0.00 H
ATOM 1094 HO2′ rU A 34 -26.076 -1.216 12.356 1.00 0.00 H
ATOM 1095 H1′ rU A 34 -23.980 -2.361 13.022 1.00 0.00 H
ATOM 1096 H3 rU A 34 -26.928 -5.198 11.066 1.00 0.00 H
ATOM 1097 H5 rU A 34 -26.997 -6.296 15.134 1.00 0.00 H
ATOM 1098 H6 rU A 34 -25.608 -4.357 15.602 1.00 0.00 H
TER 1099 rU A 34
MASTER 46 0 0 0 0 0 0 6 1098 1 0 3
END

Now i dont know how much is the difference between the two files.