Reply To: -score_app:linmin flag not working

[Anonymous]

The documentation is out of date (sigh…). That flag was for “score” in 3.1; score_jd2 in 3.2 did not get it ported over. You are correct that the two executeables are different, and that 3.2 does not include the older one. (You can still get 3.1 if you wanted…)

linmin is not really a good choice for minimizing a raw pdb anyway. What do you need the minimization to do?