Thank you for your reply. If I want to use minirosetta for running MPI-capable abinitio relax, how should I execute the minirosetta? I have it installed and it is working, although I am not entirely sure what this broker flag does. Should I just include -broker in my flags file?
I tried the abinitiorelax.script that smg3d posted above. It worked except that the output file has multiple entry of the same tag, e.g. I have multiple S_0000001.pdb structure in my silent file.
I really hope this post makes sense. Thank you for your assistance.