Reply To: mpi / jd2 with AbinitioRelax and relax (3.2)

[Anonymous]

I got the following error message after adding the -run:protocol broker in my flags. Anyone has any idea? It seems that the AbrelaxMover is not working properly.

Thank you for all the pointers. They’re highly appreciated. I think I understand more about what you guys were talking about in the older posts too.

Run script (I copied from smg3d and omitted the line that says module load) -> wondering if this causes the crash?:

#!/bin/tcsh
#$ -N centr-17
#$ -P eer-775-aa
#$ -l h_rt=00:40:00
#$ -cwd
#$ -o script1.log
#$ -e script1.err
#$ -pe default 8

time mpirun -np 15 /programs/nmr/x86_64/rosetta/rosetta-3.2-mpi/bin/minirosetta.linuxgccrelease @flags

Error message:
……..
protocols.general_abinitio: AbrelaxMover: S_00001
core.scoring.constraints: Constraint choice: ./input/kf2.cen_cst
core.scoring.constraints: Constraint choice: ./input/kf2.cen_cst
core.scoring.constraints: Constraint choice: ./input/kf2.tetraL.fa_cst
protocols.general_abinitio: AbrelaxMover: S_00001
core.scoring.constraints: Constraint choice: ./input/kf2.cen_cst
core.scoring.constraints: Constraint choice: ./input/kf2.cen_cst
core.scoring.constraints: Constraint choice: ./input/kf2.tetraL.fa_cst

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mpirun noticed that process rank 13 with PID 27046 on node bombobear.mmb.usyd.edu.au exited on signal 11 (Segmentation fault).