Reply To: cluster error

[Anonymous]

How many structures are you trying to cluster? Does it seem that it gets to the end of the list and crashes, or is it crashing midway through? It could be that one particular structure is bad, or you are running out of memory halfway through.

You may get more information if you run the code and let it print output to your terminal, instead of using a logfile – this usually doesn’t buffer, so the output won’t end midline like it does now.

You will get a LOT more information if you compile and run in debug mode (preferably in a debugger) – this will, of course, take probably many hours, and requires knowledge of how to use the debugger…