Reply To: How to obtain alignment file for comparative modeling under Rosetta 3.1?

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March 21, 2011 at 3:34 pm #5214
Anonymous

    Hi lennylv,

    Take a look at the Meiler Lab documentation for homology modeling. It provides information on how to create alignments and thread using Rosetta. It also provides scripts to automate much of the work. Look under the homology modeling tutorial. I believe that most people use clustaw for alignments.

    http://www.meilerlab.org/index.php/jobs/resources

    Steven C.