Member Site Forums Rosetta 3 Rosetta 3 – Applications error mesages from RosettaDock Reply To: error mesages from RosettaDock


    What distinguishes the different inputs in your data set? Are they different protein complexes? If so, I’d guess something is subtly wrong (or at least, subtly Rosetta-inappropriate) with some fraction of the inputs; they don’t happen to crash out at PDB reading but instead at the docking line you list.

    Another possibility is that the failing set are more-than-two-body problems, and docking does not know which groups make for pairs of proteins?