Reply To: Build Error, ubuntu 10.10, scons 2.0, python 2.6.6 and gcc 4.4.5, truncation

[Anonymous]

I have been away for some time because of all the events that have been taking place in Egypt,

I would like to ask what else to do after getting this error message?

Running abinitio on localhost …
Running HOW_TO_MAKE_TESTS on localhost …
Finished HOW_TO_MAKE_TESTS in 0 seconds
Running backrub on localhost …
*** Test backrub did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.762222]
Finished backrub in 0 seconds
Running centroid_disulfide_scores on localhost …
*** Test abinitio did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.768115]
Finished abinitio in 0 seconds
Running classic_relax_1a19 on localhost …
*** Test centroid_disulfide_scores did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.787778]
Finished centroid_disulfide_scores in 0 seconds
Running cluster on localhost …
*** Test classic_relax_1a19 did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.797582]
Finished classic_relax_1a19 in 0 seconds
Running combine_silent on localhost …
*** Test cluster did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.811486]
Finished cluster in 0 seconds
*** Test combine_silent did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.812883]
Finished combine_silent in 0 seconds
Running docking_full_protocol on localhost …
Running docking_local_refine on localhost …
*** Test docking_full_protocol did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.825549]
Finished docking_full_protocol in 0 seconds
Running docking_local_refine_min on localhost …
*** Test docking_local_refine did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.838648]
Finished docking_local_refine in 0 seconds
*** Test docking_local_refine_min did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.840098]
Finished docking_local_refine_min in 0 seconds
Running docking_low_res on localhost …
Running docking_prepack on localhost …
*** Test docking_low_res did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.853537]
Finished docking_low_res in 0 seconds
Running enzdes on localhost …
*** Test enzdes did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.868990]
Finished enzdes in 0 seconds
Running extract_atomtree_diffs on localhost …
*** Test extract_atomtree_diffs did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.882559]
*** Test docking_prepack did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.882699]
Finished docking_prepack in 0 seconds
Finished extract_atomtree_diffs in 0 seconds
Running extract_pdbs on localhost …
Running fast_relax on localhost …
*** Test fast_relax did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.897737]
Finished fast_relax in 0 seconds
Running fixbb on localhost …
*** Test extract_pdbs did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.906840]
Finished extract_pdbs in 0 seconds
Running flexpepdock on localhost …
*** Test fixbb did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.925183]
Finished fixbb in 0 seconds
Running FloppyTail on localhost …
*** Test flexpepdock did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.933073]
Finished flexpepdock in 0 seconds
Running fold_and_dock on localhost …
*** Test FloppyTail did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.945255]
Finished FloppyTail in 0 seconds
Running kinematic_looprelax on localhost …
*** Test fold_and_dock did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.953362]
Finished fold_and_dock in 0 seconds
Running ligand_dock_7cpa on localhost …
*** Test kinematic_looprelax did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.962085]
Finished kinematic_looprelax in 0 seconds
Running ligand_dock_script on localhost …
*** Test ligand_dock_7cpa did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.973526]
Finished ligand_dock_7cpa in 0 seconds
Running loop_modeling on localhost …
*** Test ligand_dock_script did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.983064]
Finished ligand_dock_script in 0 seconds
Running match on localhost …
*** Test loop_modeling did not run! Check your –mode flag and paths. [2011-03-28 15:44:18.991719]
Finished loop_modeling in 0 seconds
Running membrane_abinitio on localhost …
*** Test match did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.009170]
Finished match in 0 seconds
Running membrane_relax on localhost …
*** Test membrane_abinitio did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.015607]
Finished membrane_abinitio in 0 seconds
Running molfile_to_params on localhost …
*** Test molfile_to_params did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.030900]
*** Test membrane_relax did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.034456]
Finished membrane_relax in 0 seconds
Finished molfile_to_params in 0 seconds
Running mr_protocols on localhost …
Running rosetta_scripts_setup on localhost …
*** Test rosetta_scripts_setup did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.054830]
*** Test mr_protocols did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.054972]
Finished rosetta_scripts_setup in 0 seconds
Finished mr_protocols in 0 seconds
Running score_aln on localhost …
Running score12_docking on localhost …
*** Test score_aln did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.069573]
Finished score_aln in 0 seconds
Running score_jd2 on localhost …
*** Test score12_docking did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.082229]
Finished score12_docking in 0 seconds
Running score_only_silence on localhost …
*** Test score_only_silence did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.094471]
Finished score_only_silence in 0 seconds
Running sequence_tolerance on localhost …
*** Test score_jd2 did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.097106]
Finished score_jd2 in 0 seconds
Running silent2frag on localhost …
*** Test sequence_tolerance did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.107646]
Finished sequence_tolerance in 0 seconds
Running symmetric_docking on localhost …
*** Test silent2frag did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.114052]
Finished silent2frag in 0 seconds
Running test_idealize on localhost …
*** Test symmetric_docking did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.129560]
Finished symmetric_docking in 0 seconds
Running threading on localhost …
*** Test test_idealize did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.138284]
Finished test_idealize in 0 seconds
*** Test threading did not run! Check your –mode flag and paths. [2011-03-28 15:44:19.145897]
Finished threading in 0 seconds

ok HOW_TO_MAKE_TESTS
FAIL abinitio
Files ref/abinitio/.test_did_not_run.log and new/abinitio/.test_did_not_run.log differ

FAIL backrub
Files ref/backrub/.test_did_not_run.log and new/backrub/.test_did_not_run.log differ

FAIL centroid_disulfide_scores
Files ref/centroid_disulfide_scores/.test_did_not_run.log and new/centroid_disulfide_scores/.test_did_not_run.log differ

FAIL classic_relax_1a19
Files ref/classic_relax_1a19/.test_did_not_run.log and new/classic_relax_1a19/.test_did_not_run.log differ

FAIL cluster
Files ref/cluster/.test_did_not_run.log and new/cluster/.test_did_not_run.log differ

FAIL combine_silent
Files ref/combine_silent/.test_did_not_run.log and new/combine_silent/.test_did_not_run.log differ

FAIL docking_full_protocol
Files ref/docking_full_protocol/.test_did_not_run.log and new/docking_full_protocol/.test_did_not_run.log differ

FAIL docking_local_refine
Files ref/docking_local_refine/.test_did_not_run.log and new/docking_local_refine/.test_did_not_run.log differ

FAIL docking_local_refine_min
Files ref/docking_local_refine_min/.test_did_not_run.log and new/docking_local_refine_min/.test_did_not_run.log differ

FAIL docking_low_res
Files ref/docking_low_res/.test_did_not_run.log and new/docking_low_res/.test_did_not_run.log differ

FAIL docking_prepack
Files ref/docking_prepack/.test_did_not_run.log and new/docking_prepack/.test_did_not_run.log differ

FAIL enzdes
Files ref/enzdes/.test_did_not_run.log and new/enzdes/.test_did_not_run.log differ

FAIL extract_atomtree_diffs
Files ref/extract_atomtree_diffs/.test_did_not_run.log and new/extract_atomtree_diffs/.test_did_not_run.log differ

FAIL extract_pdbs
Files ref/extract_pdbs/.test_did_not_run.log and new/extract_pdbs/.test_did_not_run.log differ

FAIL fast_relax
Files ref/fast_relax/.test_did_not_run.log and new/fast_relax/.test_did_not_run.log differ

FAIL fixbb
Files ref/fixbb/.test_did_not_run.log and new/fixbb/.test_did_not_run.log differ

FAIL flexpepdock
Files ref/flexpepdock/.test_did_not_run.log and new/flexpepdock/.test_did_not_run.log differ

FAIL FloppyTail
Files ref/FloppyTail/.test_did_not_run.log and new/FloppyTail/.test_did_not_run.log differ

FAIL fold_and_dock
Files ref/fold_and_dock/.test_did_not_run.log and new/fold_and_dock/.test_did_not_run.log differ

FAIL kinematic_looprelax
Files ref/kinematic_looprelax/.test_did_not_run.log and new/kinematic_looprelax/.test_did_not_run.log differ

FAIL ligand_dock_7cpa
Files ref/ligand_dock_7cpa/.test_did_not_run.log and new/ligand_dock_7cpa/.test_did_not_run.log differ

FAIL ligand_dock_script
Files ref/ligand_dock_script/.test_did_not_run.log and new/ligand_dock_script/.test_did_not_run.log differ

FAIL loop_modeling
Files ref/loop_modeling/.test_did_not_run.log and new/loop_modeling/.test_did_not_run.log differ

FAIL match
Files ref/match/.test_did_not_run.log and new/match/.test_did_not_run.log differ

FAIL membrane_abinitio
Files ref/membrane_abinitio/.test_did_not_run.log and new/membrane_abinitio/.test_did_not_run.log differ

FAIL membrane_relax
Files ref/membrane_relax/.test_did_not_run.log and new/membrane_relax/.test_did_not_run.log differ

FAIL molfile_to_params
Files ref/molfile_to_params/.test_did_not_run.log and new/molfile_to_params/.test_did_not_run.log differ

FAIL mr_protocols
Files ref/mr_protocols/.test_did_not_run.log and new/mr_protocols/.test_did_not_run.log differ

FAIL rosetta_scripts_setup
Files ref/rosetta_scripts_setup/.test_did_not_run.log and new/rosetta_scripts_setup/.test_did_not_run.log differ

FAIL score12_docking
Files ref/score12_docking/.test_did_not_run.log and new/score12_docking/.test_did_not_run.log differ

FAIL score_aln
Files ref/score_aln/.test_did_not_run.log and new/score_aln/.test_did_not_run.log differ

FAIL score_jd2
Files ref/score_jd2/.test_did_not_run.log and new/score_jd2/.test_did_not_run.log differ

FAIL score_only_silence
Files ref/score_only_silence/.test_did_not_run.log and new/score_only_silence/.test_did_not_run.log differ

FAIL sequence_tolerance
Files ref/sequence_tolerance/.test_did_not_run.log and new/sequence_tolerance/.test_did_not_run.log differ

FAIL silent2frag
Files ref/silent2frag/.test_did_not_run.log and new/silent2frag/.test_did_not_run.log differ

FAIL symmetric_docking
Files ref/symmetric_docking/.test_did_not_run.log and new/symmetric_docking/.test_did_not_run.log differ

FAIL test_idealize
Files ref/test_idealize/.test_did_not_run.log and new/test_idealize/.test_did_not_run.log differ

FAIL threading
Files ref/threading/.test_did_not_run.log and new/threading/.test_did_not_run.log differ

38 test(s) failed. Use ‘diff’ to compare results.
abomalk@ubuntu:/media/F0987CD1987C9834/_Hamada/Docking/rosetta-3.2/rosetta_source/test/integration$

what did i do wrong?