Reply To: loop model error

[Anonymous]

OK, I misunderstood you before. You HAVE PDB files, and WANT scores. Run the score application (score_jd2, perhaps?). The total_score is right there in your log file, but it’s challenging to extract from there. The same total_score number may be at the end of each PDB file (where you can grep it out). Running score will get you more useful per-residue and per-term scores.

It’s almost criminal that the loop modeling code (which has already calculated all these scores) doesn’t automatically output them for you…