Reply To: loop model error

[Anonymous]

yes, you are right. here is my full option, do you have any suggestion for solving this by add option to it? I think it would be more reliable if it generate the score file during the model steps.

-nstruct 10 #number of models to build. 1000 recommended for production runs.
-loops:input_pdb input.pdb
-loops:loop_file input.loops
-loops:relax fastrelax
-loops:extended #force phi-psi angles to be set to 180 degrees independent of loop input file (recommended for production runs)
-loops:remodel perturb_kic
-loops:refine refine_kic
-ex1 #Include extra chi1 rotamers
-ex2
#-out:file:silent_struct_type binary #output file type
out:file:pdb
-out:suffix aa
-out:file:scorefile score.sc

-out:file:fullatom #output file will be fullatom