Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Does Rosetta recognise OXT atom type in PDB.? › Reply To: Does Rosetta recognise OXT atom type in PDB.?
April 12, 2011 at 1:55 pm
#5363
I’m not sure I understand the question – were the OXTs wrong before or after you ran FlexPepDock?
Rosetta will read OXT atoms in, so if they are “wrong” in some sense, you should delete them. Rosetta does a good job of detecting termini and adding the extra OXT, etc, atoms as necessary. If OXT is not present, Rosetta will add it in the right place.