Reply To: Does Rosetta recognise OXT atom type in PDB.?

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April 12, 2011 at 1:55 pm #5363
Anonymous

    I’m not sure I understand the question – were the OXTs wrong before or after you ran FlexPepDock?

    Rosetta will read OXT atoms in, so if they are “wrong” in some sense, you should delete them. Rosetta does a good job of detecting termini and adding the extra OXT, etc, atoms as necessary. If OXT is not present, Rosetta will add it in the right place.