Reply To: How to relax only one domain of a protein and keep the rest of them fixed

[Anonymous]

From Hayretin:

“I checked as I was curious and the relax applications did take the fix_residues_to_native flag but after I ran it, it looks like it has changed other parts of the protein as well (slightly moved the loops). Maybe it is pymol rendering but in any case the applications does take the flag and seems to be mainly working on that part.

~/rosetta/mini/bin/relax.macosgccrelease -database ~/rosetta/minirosetta_database/ -s xx.pdb -fix_residues_to_native x x”