Member Site › Forums › Rosetta 3 › Rosetta 3 – General › How to relax only one domain of a protein and keep the rest of them fixed › Reply To: How to relax only one domain of a protein and keep the rest of them fixed
A) It may be worth checking that you edited the occupancies and not the B-factors?
Try the flag relax::default_repeats. It appears to have a default of either 5 or 8, so maybe you can try 3? This is a guess, I don’t really know what the flag does. You can try running relax, WITHOUT this flag, WITH the flag show_accessed_options – that will report at the end of the run if it ever even checks that flag (which I am not sure of).