Member Site Forums Rosetta 3 Rosetta 3 – Applications flexpep docking problem Reply To: flexpep docking problem


    I am having the same problem. The line refrred to in the error talks about the occupancy entries in the pdb file, but it doesn’t help when I set them all to 1.00.
    command: /home/rosetta-3.2/rosetta_source/bin/FlexPepDocking.linuxgccrelease -s input.pdb -database /home/rosetta-3.2/rosetta_database/ -flexpep_prepack -ex1 -ex2aro
    An idea of what the problem is would be appreciated.

    EDIT: OK it works so long as the native structure is included in the command