Reply To: flexpep docking problem

[Anonymous]

Dear All:
by following the comment of pardave, I add the -native renum.pdb in my command. It goes well and finished the calculation successfully. So in summary:
1, use some script to renumber your protein, best way is start from residue number 1. ( I don’t know this is the real issue. But If I use the discontinued residue numbers, the flexpep_docking program crashed with the segment fault error.)
2, use the command including the -native *.pdb ( can be same as the -s *.pdb)

Hoping this is useful to you.

Best wishes,