Member Site › Forums › Rosetta 3 › Rosetta 3 – General › Is it possible to do Abinitio folding from a linear structure.? › Reply To: Is it possible to do Abinitio folding from a linear structure.?
April 20, 2011 at 10:00 am
#5459
Anonymous
Hi,
Could you provide the cmd-line you used? (Just to assess if the problem is not there…)
By the way, flexpepdock has an intrinsic option to let you start the simulation from an extended peptide (“-extend_peptide true” : start the protocol with the peptide in extended conformation (neglect original peptide conformation ; extend from the anchor residue)
Cheers,
Nir.