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You are correct that you are having problems with zlib. Unfortunately I have no idea what they are, specifically. Nobody in my lab (nor I) have ever gotten the cygwin build to work.
Undefined reverence is a linker error, not a compiling error. This implies that the problem is a mismatch between what Rosetta expects to see in zlib, and what your copy of zlib actually contains. I don’t know how to fix that.