Reply To: Help with enzyme design

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April 30, 2011 at 7:31 am #5512
Anonymous

    Hi many thanks for helping me out..

    I checked on the file permissions..they seem to be fine. Besides, I had no trouble running protein design, ligand and protein docking previously, with the modified files copied from the demos folders..

    Here is how I usually run things:

    /usr/local/rosetta3.2/rosetta_source/bin/enzyme_design.linuxgccrelease -database /usr/local/rosetta3.2/rosetta_database/ @flags > enzdes.log

    The input, flags, params and cst files are all in the folder /usr/local/rosetta3.2/my_file/….

    I will try it again by shifting files around after my finals. Thanks for the help!