Member Site › Forums › Rosetta 3 › Rosetta 3 – Build/Install › test/run.py errors › Reply To: test/run.py errors
Anonymous
Hi,smlewis,thank you very much,it seems to be working well,
when I run “scons -j8 cat=test mode=release”
…
/gcc/utility/keys/SmallKeyVector.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/keys/UserKey.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/factory/Factory.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/BufferedSignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/PausableSignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/SignalHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/signals/TokenHub.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/io/izstream.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/io/zipstream.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/access_ptr.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/owning_ptr.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/pointer/owning_ptr_MI.cxxtest.o build/test/release/linux/2.6/64/x86/gcc/utility/utility.cxxtest.o -Llib -Lexternal/lib -Lbuild/src/release/linux/2.6/64/x86/gcc -L/usr/local/lib -L/usr/lib -lutility -lObjexxFCL -lz
/usr/bin/ld: skipping incompatible /usr/lib/libz.so when searching for -lz
/usr/bin/ld: skipping incompatible /usr/lib/libz.a when searching for -lz
/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc
Copy(“build/test/release/linux/2.6/64/x86/gcc//utility/io/no_final_newline.txt”, “test/utility/io/no_final_newline.txt”)
scons: done building targets.
when I run “test/run.py -d /rosetta/rosetta_database -j8 –mode=release”
…
0.81 0.00 0.89 -0.04 0.29
protocols.moves.ScoreMover: E(i) 97 -3.95 1.86 1.68 1.36 4.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.15 0.08 1.67 -1.91 0.02
protocols.moves.ScoreMover: E(i) 98 -5.37 0.89 1.33 0.83 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.06 2.50 1.41 0.02
protocols.moves.ScoreMover: E(i) 99 -4.05 2.25 2.56 2.00 0.00 -0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.15 2.73 -0.01 0.56
protocols.moves.ScoreMover: E(i) 100 -3.98 0.95 2.08 1.10 0.00 -0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.53 0.11 5.70 -0.16 -0.65
protocols.moves.ScoreMover: E(i) 101 -8.48 1.23 3.58 6.95 0.00 0.00 0.00 0.00 -0.02 0.00 0.00 0.00 0.00 0.00 -0.70 0.04 3.28 0.40 0.51
protocols.moves.ScoreMover: E(i) 102 -9.33 12.62 7.73 11.00 0.00 -0.64 0.00 0.00 -0.64 0.00 0.00 0.00 0.00 0.00 -0.97 0.21 28.26 -0.25 -0.98
protocols.moves.ScoreMover: E(i) 103 -3.38 0.71 2.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 13.82 -0.13 -0.34
protocols.moves.ScoreMover: E(i) 104 -3.75 2.57 3.71 1.53 0.00 0.00 0.00 0.00 0.00 -0.03 0.00 0.00 0.00 0.00 0.25 0.16 2.64 -0.27 -0.27
protocols.moves.ScoreMover: E(i) 105 -1.71 1.96 1.65 0.60 0.00 -0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 0.15 4.67 0.12 -0.89
protocols.moves.ScoreMover: E(i) 106 -1.12 0.70 0.88 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.17 15.76 0.35 -0.34
protocols.moves.ScoreMover: E(i) 107 -3.19 2.10 2.60 1.10 0.00 -0.03 0.00 0.00 0.00 -0.03 0.00 0.00 0.00 0.00 0.93 0.18 12.99 0.09 -0.97
protocols.moves.ScoreMover: E(i) 108 -1.64 3.57 1.35 0.00 0.00 0.00 0.00 0.00 -0.02 0.00 0.00 0.00 0.00 0.00 0.96 0.07 0.00 -1.81 -0.17
protocols.moves.ScoreMover: E(i) 109 -3.39 1.11 2.04 2.51 0.00 -0.25 0.00 0.00 0.00 -0.06 0.00 0.00 0.00 0.00 -0.33 0.04 8.40 -0.36 -0.81
protocols.moves.ScoreMover: E(i) 110 -2.44 4.82 1.86 0.33 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.10 0.71 -0.06 -0.37
protocols.moves.ScoreMover: E(i) 111 -4.96 0.84 4.32 2.92 0.00 -0.23 0.00 0.00 -0.37 -0.43 0.00 0.00 0.00 0.00 0.95 0.00 9.82 1.03 -0.98
protocols.moves.ScoreMover: E(i) 112 -7.51 1.30 3.66 6.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -1.40 0.50 3.29 0.11 0.63
protocols.moves.ScoreMover: E(i) 113 -5.13 3.06 3.32 2.21 0.00 0.00 0.00 0.00 -0.66 0.00 0.00 0.00 0.00 0.00 -0.41 0.02 3.32 -0.41 -0.10
protocols.moves.ScoreMover: E(i) 114 -4.08 1.79 3.13 0.89 2.31 -0.34 0.00 0.00 0.00 -0.06 0.00 0.00 0.00 0.00 -0.41 0.05 2.40 0.05 0.56
protocols.moves.ScoreMover: E(i) 115 -4.30 5.97 3.04 0.77 2.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 5.13 -2.81 0.02
protocols.moves.ScoreMover: E(i) 116 -2.97 5.88 2.66 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.19 0.00 -0.10
protocols.moves.ScoreMover: total_energy fa_atr -605.070
protocols.moves.ScoreMover: total_energy fa_rep 821.455
protocols.moves.ScoreMover: total_energy fa_sol 385.544
protocols.moves.ScoreMover: total_energy fa_intra_rep 531.407
protocols.moves.ScoreMover: total_energy pro_close 17.217
protocols.moves.ScoreMover: total_energy fa_pair -21.232
protocols.moves.ScoreMover: total_energy hbond_sr_bb -63.928
protocols.moves.ScoreMover: total_energy hbond_lr_bb -1.274
protocols.moves.ScoreMover: total_energy hbond_bb_sc -6.158
protocols.moves.ScoreMover: total_energy hbond_sc -1.953
protocols.moves.ScoreMover: total_energy dslf_ss_dst 0.000
protocols.moves.ScoreMover: total_energy dslf_cs_ang 0.000
protocols.moves.ScoreMover: total_energy dslf_ss_dih 0.000
protocols.moves.ScoreMover: total_energy dslf_ca_dih 0.000
protocols.moves.ScoreMover: total_energy rama 127.207
protocols.moves.ScoreMover: total_energy omega 10.675
protocols.moves.ScoreMover: total_energy fa_dun 829.572
protocols.moves.ScoreMover: total_energy p_aa_pp -30.636
protocols.moves.ScoreMover: total_energy ref -30.360
protocols.moves.ScoreMover: dslf_ca_dih dslf_cs_ang dslf_ss_dih dslf_ss_dst fa_atr fa_dun fa_intra_rep fa_pair fa_rep fa_sol hbond_bb_sc hbond_lr_bb hbond_sc hbond_sr_bb omega p_aa_pp pro_close rama ref total_score
protocols.moves.ScoreMover: 0.000 0.000 0.000 0.000 -484.056 464.560 2.126 -10.404 361.440 250.604 -7.204 -1.490 -2.149 -37.398 5.337 -9.804 17.217 25.441 -30.360 543.861
protocols.moves.ScoreMover:
Scores Weight Raw Score Wghtd.Score
fa_atr 0.800 -605.070 -484.056
fa_rep 0.440 821.455 361.440
fa_sol 0.650 385.544 250.604
fa_intra_rep 0.004 531.407 2.126
pro_close 1.000 17.217 17.217
fa_pair 0.490 -21.232 -10.404
hbond_sr_bb 0.585 -63.928 -37.398
hbond_lr_bb 1.170 -1.274 -1.490
hbond_bb_sc 1.170 -6.158 -7.204
hbond_sc 1.100 -1.953 -2.149
dslf_ss_dst 0.500 0.000 0.000
dslf_cs_ang 2.000 0.000 0.000
dslf_ss_dih 5.000 0.000 0.000
dslf_ca_dih 5.000 0.000 0.000
rama 0.200 127.207 25.441
omega 0.500 10.675 5.337
fa_dun 0.560 829.572 464.560
p_aa_pp 0.320 -30.636 -9.804
ref 1.000 -30.360 -30.360
Total weighted score: 543.861
End Scoring -score:patch score12 test
End Scoring tests
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
Test suite: RigidBodyMoverTests (test/protocols/moves/RigidBodyMover.cxxtest.hh)
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
protocols.moves.RigidBodyMover: Randomize: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
protocols.moves.RigidBodyMover: Randomize: Rot (before): 43.5465 33.1704 32.848
protocols.geometry.RB_geometry: random_reorientation_matrix phi: 7.31801 psi: 22.3378 theta: 149.67
protocols.moves.RigidBodyMover: Randomize: Jump (after): RT 0.344677 -0.744406 0.571889 0.93802 0.249584 -0.24047 0.0362735 0.619328 0.784294 -20.0674 -11.9204 4.27313
protocols.moves.RigidBodyMover: Randomize: Rot (after): 43.5465 33.1704 32.848
protocols.moves.RigidBodyMover: Randomize: —
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
protocols.moves.RigidBodyMover: Spin: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
protocols.moves.RigidBodyMover: Spin: Rot (before: 43.5465 33.1704 32.848
protocols.moves.RigidBodyMover: Spin: Jump (after): RT -0.834199 0.421317 -0.355815 -0.502856 -0.316281 0.804427 0.22638 0.849976 0.475703 -18.0229 -13.3583 4.77134
protocols.moves.RigidBodyMover: Spin: Rot (after): 43.5465 33.1704 32.848
protocols.moves.RigidBodyMover: Spin: —
core.init: Mini-Rosetta version 已导出 from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue CYS_p:CtermProteinFull 301
core.conformation.Conformation: Found disulfide between residues 1 122
core.conformation.Conformation: current variant for 1 CYS
core.conformation.Conformation: current variant for 122 CYS
core.conformation.Conformation: current variant for 1 CYD
core.conformation.Conformation: current variant for 122 CYD
core.conformation.Conformation: Found disulfide between residues 42 58
core.conformation.Conformation: current variant for 42 CYS
core.conformation.Conformation: current variant for 58 CYS
core.conformation.Conformation: current variant for 42 CYD
core.conformation.Conformation: current variant for 58 CYD
core.conformation.Conformation: Found disulfide between residues 136 201
core.conformation.Conformation: current variant for 136 CYS
core.conformation.Conformation: current variant for 201 CYS
core.conformation.Conformation: current variant for 136 CYD
core.conformation.Conformation: current variant for 201 CYD
core.conformation.Conformation: Found disulfide between residues 168 182
core.conformation.Conformation: current variant for 168 CYS
core.conformation.Conformation: current variant for 182 CYS
core.conformation.Conformation: current variant for 168 CYD
core.conformation.Conformation: current variant for 182 CYD
core.conformation.Conformation: Found disulfide between residues 191 220
core.conformation.Conformation: current variant for 191 CYS
core.conformation.Conformation: current variant for 220 CYS
core.conformation.Conformation: current variant for 191 CYD
core.conformation.Conformation: current variant for 220 CYD
core.conformation.Conformation: Found disulfide between residues 254 283
core.conformation.Conformation: current variant for 254 CYS
core.conformation.Conformation: current variant for 283 CYS
core.conformation.Conformation: current variant for 254 CYD
core.conformation.Conformation: current variant for 283 CYD
core.conformation.Conformation: Found disulfide between residues 261 280
core.conformation.Conformation: current variant for 261 CYS
core.conformation.Conformation: current variant for 280 CYS
core.conformation.Conformation: current variant for 261 CYD
core.conformation.Conformation: current variant for 280 CYD
core.conformation.Conformation: Found disulfide between residues 269 301
core.conformation.Conformation: current variant for 269 CYS
core.conformation.Conformation: current variant for 301 CYS
core.conformation.Conformation: current variant for 269 CYD
core.conformation.Conformation: current variant for 301 CYD
core.pack.task: Packer task: initialize from command line()
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -17.8087 -14.756 0.651526
protocols.moves.RigidBodyMover: Translate: Jump (after): RT -0.741525 0.289074 0.605456 -0.643594 -0.561425 -0.520182 0.189547 -0.775396 0.602357 -18.6155 -15.327 0.803288
Test suite: MoversTest (test/protocols/moves/MoversTest.cxxtest.hh)
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database -no_optH
Testing: SmallMover…
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
core.pack.task: Packer task: initialize from command line()
End SmallMover test
Testing: ShearMover…
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
core.pack.task: Packer task: initialize from command line()
End ShearMover test
Test suite: ContainerMoversTest (test/protocols/moves/MoverContainer.cxxtest.hh)
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
Test suite: BackrubMoverTest (test/protocols/moves/BackrubMover.cxxtest.hh)
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.conformation.Conformation: [ WARNING ] missing heavyatom: OXT on residue LEU_p:CtermProteinFull 116
core.pack.task: Packer task: initialize from command line()
protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment
protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (reversed)
protocols.moves.BackrubMover.cxxtest: Attempting 2 residue segment
protocols.moves.BackrubMover.cxxtest: Attempting 3 atom segment
protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (duplicate)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 2 rsd= 2 to atomno= 2 rsd= 4 already exists, ignoring
protocols.moves.BackrubMover.cxxtest: Attempting 3 residue segment (invalid)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 7 rsd= 1 to atomno= 2 rsd= 3 invalid, ignoring
protocols.moves.BackrubMover.cxxtest: Attempting 2 atom segment (short)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 2 rsd= 1 to atomno= 3 rsd= 1 too short, ignoring
protocols.moves.BackrubMover.cxxtest: Attempting 2 atom segment (short, reversed)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 3 rsd= 1 to atomno= 2 rsd= 1 too short, ignoring
protocols.moves.BackrubMover.cxxtest: Attempting 1 atom segment (ultra short)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 3 rsd= 1 to atomno= 3 rsd= 1 too short, ignoring
protocols.moves.BackrubMover.cxxtest: Attempting 2 residue segment (N atoms)
protocols.moves.BackrubMover: Warning: Backrub segment atomno= 1 rsd= 1 to atomno= 1 rsd= 2 invalid, ignoring
protocols.moves.BackrubMover.cxxtest: Rotating segment 1
protocols.moves.BackrubMover.cxxtest: Rotating lysine side chain segment
core.io.database: Database file opened: /rosetta/rosetta_database/branch_angle/branch_angle_1.txt
core.io.database: Database file opened: /rosetta/rosetta_database/branch_angle/branch_angle_2.txt
Test suite: TorsionSamplingKinematicPerturberTests (test/protocols/moves/kinematic_closure/TorsionSamplingKinematicPerturber.cxxtest.hh)
core.init: Mini-Rosetta version Exported from unknown
core.init: command: ./protocols.test –database /rosetta/rosetta_database
core.pack.task: Packer task: initialize from command line()
All tests passed!
Unable to read yaml file with test results build/test/release/linux/2.6/64/x86/gcc//devel.test.yaml – unit test run aborted!